genome-sampler installation instructions¶
This document provides instructions for installing genome-sampler.
Installation instructions¶
Install Miniconda¶
Miniconda provides the conda environment
and package manager, and is the recommended way to install genome-sampler.
Follow the instructions for downloading and installing Miniconda. You may
choose either Miniconda2 or Miniconda3 (i.e. Miniconda Python 2 or 3).
genome-sampler will work with either version of Miniconda.
Install wget¶
conda install wget
Create a conda environment for genome-sampler¶
For linux installation environments, please run:
wget https://raw.githubusercontent.com/caporaso-lab/genome-sampler/r2020.8/conda-env-files/genome-sampler-py36-linux-conda.yml
conda env create -n genome-sampler-2020.8 --file genome-sampler-py36-linux-conda.yml
rm genome-sampler-py36-linux-conda.yml
For macOS installation environments, please run:
wget https://raw.githubusercontent.com/caporaso-lab/genome-sampler/r2020.8/conda-env-files/genome-sampler-py36-osx-conda.yml
conda env create -n genome-sampler-2020.8 --file genome-sampler-py36-osx-conda.yml
rm genome-sampler-py36-osx-conda.yml
Activate the genome-sampler conda environment¶
conda activate genome-sampler-2020.8